Michelle O'Malley Google Scholar

2026

100.

T. Kefela, D. Li, L.C. Van De Werfhorst, R.M Reynolds, R. Behrens, Y. Floyd, J.L. Brown, J. Smith, M.A. O’Malley, P.A. Holden

Bacterial community colonization with minimal alteration of plastics in suboxic sediments from a marine methane seep

Applied and Environmental Microbiology

Link


2025

99.

R.Ragunathan, H.M. Purdy, S. Seppala, H. Gwak, S. Calhoun, B.S. Twining, I.V. Grigoriev, B.F. Chmelka, M.A. Brzezinksi, M.A. O'Malley.

Increased aluminum exposure induces widespread changes in silicon, carbon, and nitrogen metabolism in Entomoneis vertebralis

BMC Genomics

Link


97.

T.S. Lankiewicz, B.Amer, E.E.K. Baidoo, P.A. Leggieri, M.A. O’Malley.

The anaerobic fungus Neocallimastix californiae shifts metabolism and produces melanin in response to lignin-derived aromatic compounds

Biotechnology for Biofuels and Bioproducts | 18, Article number: 96 (2025)

Link


98.

L.V. Butkovich, C.L. Swift, C.S. Clendinen, HM. Olson, S.O. Purvine, O.B. Vining, M.A. O’Malley.

Untargeted GC-MS Metabolic Profiling of Anaerobic Gut Fungi Reveals Putative Terpenoids and Strain-Specific Metabolites

Metabolites

Link


96.

C.B. Ahern, I. Chen, M. Huntemann, N. Ivanova, N. Kyrpides, S. Mukherjee, K. Palaniappan, C. Pennacchio, T.B.K. Reddy, S. Ritter, A. Spunde, D. Stamatis, P. Wang, T. Woyke, Y. Zhang, M.A. O'Malley.

High-quality draft genome sequence of Thermobifida halotolerans DSM 44931

Microbiology Resource Announcement

Link


95.

S. Jin, I.R. Farrand, Y. Chen, J.W. Gin, B. Zhang, E. Kirschke, C.J. Petzold, P.D. Adams, M.A. O'Malley.

A large-scale screening campaign of putative carbohydrate-active enzymes reveals a novel xylanase from anaerobic gut fungi

mBio

Link


94.

E.M. Blair, N.J. Margalith, M.A. O’Malley.

Microbial Enrichments Contribute to Characterization of Desert Tortoise Gut Microbiota

Microbial Ecology

Link


93.

E.M. Blair, T.A. Navaratna, C.B. Ahern, R. Ragunathan, J.L. Brown, S.J. Mondo, A. Lipzen, R.A. Hanafy, K. LaButti, J. Talag, K. Barry, M. Chovatia, M. Wang, J. Gonzalez, X. Peng, I.V. Grigoriev, M.A. O'Malley.

Genomic and Transcriptomic Characterization of Carbohydrate-Active Enzymes in the Anaerobic Fungus Neocallimastix cameroonii var. constans

G3: Genes, Genomes, Genetics

Link


92.

T.S. Lankiewicz, N.H. Elisabeth, D.L. Valentine, M.A. O'Malley.

An Argument for Using Anaerobes as Microbial Cell Factories to Advance Synthetic Biology and Biomanufacturing

AIChE Journal (Cover Article)

Link


91.

L.V. Butkovich, P.A. Leggieri, S.P. Lillington, T.A. Navaratna, C.L. Swift, N.G. Malinov, T.R. Zalunardo, O.B. Vining, A. Lipzen, M. Wang, J. Yan, V. Ng, I.V. Grigoriev, M.A. O'Malley.

Separation of Life Stages within Anaerobic Fungi (Neocallimastigomycota) Highlights Differences in Global Transcription and Metabolism

Fungal Genetics and Biology

Link


90.

S. Agarwala, M.A. O’Malley, T. Eng.

Editorial Reflections on BioEnergy: Perspectives from 2024

Current Opinion in Biotechnology

Link


89.

L.V. Butkovich, O.B. Vining, M.A. O’Malley.

New Approaches to Secondary Metabolite Discovery from Anaerobic Gut Microbes

Applied Microbiology and Biotechnology

Link


2024

88.

V. Mubayi, C.B. Ahern, M. Calusinska, M.A. O’Malley.

Toward a Circular Bioeconomy: Designing Microbes and Polymers for Biodegradation.

ACS Synthetic Biology

Link


87.

E.M. Blair, J.L. Brown, D. Li, P.A. Holden, M.A. O'Malley.

Metagenomics Analysis Yields Assembled Genomes from Prokaryotic Anaerobes with Polymer‐Degrading Potential

Biotechnology Progress

Link


86.

T.A. Navaratna, N. Alansari, A.R. Eisenberg, M.A. O’Malley.

Anaerobic Fungi Contain Abundant, Diverse, and Transcriptionally Active Long Terminal Repeat Retrotransposons

Fungal Genetics and Biology

Link


85.

H. Doré, A.R. Eisenberg, E.N. Junkins, G.E. Leventhal, A. Ganesh, O.X. Cordero, B.G. Paul, D.L. Valentine, M.A. O'Malley, E.G. Wilbanks.

Targeted Hypermutation of Putative Antigen Sensors in Multicellular Bacteria

Proceedings of the National Academy of Sciences

Link


84.

N. Liu, V. Kivenson, X. Peng, Z. Cui, T.S. Lankiewicz, K.M. Gosselin, C.J. English, E.M. Blair, M.A. O'Malley, D.L. Valentine.

Pontiella agarivorans sp. nov., a Novel Marine Anaerobic Bacterium Capable of Degrading Macroalgal Polysaccharides and Fixing Nitrogen

Applied and Environmental Microbiology

Link


83.

P.A. Leggieri, E.M. Blair, T.S. Lankiewicz, M.A. O'Malley.

Continuous Culture of Anaerobic Fungi Enables Growth and Metabolic Flux Tuning Without Use of Genetic Tools

Bioresource Technology

Link


2023

82.

K.A. Heom, C. Wangsanuwat, L.V. Butkovich, S.C. Tam, A.R. Rowe, M.A. O’Malley.

Targeted rRNA depletion enables efficient mRNA sequencing in diverse bacterial species and complex co-cultures

mSystems

Link


81.

S.P. Lillington, M. Hamilton, J.F. Cheng, Y. Yoshikuni, M.A. O'Malley.

Expression and Characterization of Spore Coat CotH Kinases from the Cellulosomes of Anaerobic Fungi (Neocallimastigomycetes)

Protein Expression and Purification

Link


80.

A. Dementiev, S.P. Lillington, S. Jin, Y. Kim, R. Jedrzejczak, K. Michalska, A. Joachimiak, M.A. O'Malley.

Structure and Enzymatic Characterization of CelD Endoglucanase from the Anaerobic Fungus Piromyces finnis

Applied Microbiology and Biotechnology

Link


79.

S. Seppälä, T. Gierke, E.E. Schauer, J.L. Brown, M.A. O'Malley.

Identification and Expression of Small Multidrug Resistance Transporters in Early‐Branching Anaerobic Fungi

Protein Science

Link


78.

J.L. Brown, T. Gierke, L.V. Butkovich, C.L. Swift, V. Singan, C. Daum, K. Barry, I.V. Grigoriev, M.A. O'Malley.

High-Quality RNA Extraction and the Regulation of Genes Encoding Cellulosomes Are Correlated with Growth Stage in Anaerobic Fungi

Frontiers in Fungal Biology

Link


77.

T.S. Lankiewicz, H. Choudhary, Y. Gao, B. Amer, S.P. Lillington, P.A. Leggieri, J.L. Brown, C.L. Swift, A. Lipzen, H. Na, M. Amirebrahimi, M.K. Theodorou, E.E.K Baidoo, K. Barry, I.V. Grigoriev, V.I. Timokhin, J. Gladden, S. Singh, J.C. Mortimer, J. Ralph, B.A. Simmons, S.W. Singer, M.A. O'Malley

Lignin Deconstruction by Anaerobic Fungi

Nature Microbiology (Cover article)

Link


76.

C.T. Han, K.D.Q. Nguyen, M.W. Berkow, S. Hussain, A. Kiani, M. Kinnebrew, M.N. Idso, N. Baxter, E. Chang, E. Aye, E. Winslow, M. Rahman, S. Seppala, M.A. O'Malley, B.F. Chmelka, B. Mertz, S. Han.

Lipid Membrane Mimetics and Oligomerization Tune Functional Properties of Proteorhodopsin

Biophysical Journal

Link


2022

75.

J.L. Brown, M.A. Perisin, C.L. Swift, M. Benyamin, S. Liu, V. Singan, Y. Zhang, E. Savage, C. Pennacchio, I.V. Grigoriev, M.A. O'Malley.

Co Cultivation of Anaerobic Fungi with Clostridium acetobutylicum Bolsters Butyrate and Butanol Production from Cellulose and Lignocellulose

Journal of Industrial Microbiology and Biotechnology

Link


74.

U. Neri, Y.I. Wolf, S. Roux, A.P. Camargo, B. Lee, D. Kazlauskas, I.M. Chen, N. Ivanova, L.Z. Allen, D. Paez-Espino, D.A. Bryant, D. Bhaya, RNA Virus Discovery Consortium (including M.A. O'Malley), M. Krupovic, V.V. Dolja, N.C. Kyrpides, E.V. Koonin, 

Expansion of the Global RNA Virome Reveals Diverse Clades of Bacteriophages

Cell

Link


73.

P.A. Leggieri, M.T. Valentine, M.A. O'Malley.

Biofilm Disruption Enhances Growth Rate and Carbohydrate-Active Enzyme Production in Anaerobic Fungi

Bioresource Technology

Link


72.

M.S. Elshahed, R.A. Hanafy, Y. Cheng, S.S. Dagar, J.E. Edwards, V. Flad, K.O. Fliegerova, G.W. Griffith, S. Kittelmann, M. Lebuhn, M.A. O'Malley, S.M. Podmirseg, K.V. Solomon, J. Vinzelj, D. Young, N.H. Youssef.

Characterization and rank assignment criteria for the Anaerobic Fungi (Neocallimastigomycota)

International Journal of Systematic and Evolutionary Microbiology

Link


71.

T.S. Lankiewicz, S.P. Lillington, M.A. O’Malley.

Enzyme Discovery in Anaerobic Fungi (Neocallimastigomycetes) Enables Lignocellulosic Biorefinery Innovation

Microbiology and Molecular Biology Reviews

Link


70.

B.J. Fremin, A.S. Bhatt, N.C. Kyrpides, Global Phage Small Open Reading Frame Consortium (including M.A. O'Malley)

Thousands of Small, Novel Genes Predicted in Global Phage Genomes

Cell Reports

Link


69.

I.A. Podolsky, E.E. Schauer, S. Seppälä, M.A. O’Malley.

Identification of Novel Membrane Proteins for Improved Lignocellulose Conversion

Current Opinion in Biotechnology

Link


68.

J.I. Yoo, T.A. Navaratna, P. Kolence, M.A. O’Malley.

GPCR-FEX: A Fluoride-Based Selection System for Rapid GPCR Screening and Engineering

ACS Synthetic Biology

Link


2021

67.

J.L. Brown, C.L. Swift, S.J. Mondo, S. Seppälä, A. Salamov, V. Singan, B. Henrissat, E. Drula, J.K. Henske, S. Lee, K. LaButti, G. He, M. Yan, K. Barry, I.V. Grigoriev, M.A. O'Malley.

Co‑cultivation of the anaerobic fungus Caecomyces churrovis with Methanobacterium bryantii enhances transcription of carbohydrate binding modules, dockerins, and pyruvate formate lyases on specific substrates

Biotechnology for Biofuels

Link


66.

E.M. Blair, K.L. Dickson, M.A. O’Malley.

Microbial communities and their enzymes facilitate degradation of recalcitrant polymers in anaerobic digestion

Current Opinion in Microbiology

Link


65.

P.A. Leggieri, C. Kerdman-Andrade, T.S. Lankiewicz, M.T. Valentine, M.A. O'Malley.

Non-destructive quantification of anaerobic gut fungi and methanogens in co-culture reveals increased fungal growth rate and changes in metabolic flux relative to mono-culture

Microbial Cell Factories

Link


64.

C.L. Swift, K.B. Louie, B.P. Bowen, C.A. Hooker, K.V. Solomon, V. Singan, C. Daum, C.P. Pennacchio, K. Barry, V. Shutthanandan, J.E. Evans, I.V. Grigoriev, T.R. Northen, M.A. O'Malley.

Co-cultivation of anaerobic fungi with rumen bacteria establishes an antagonistic relationship

MBio

Link


63.

C.L. Swift, N.G. Malinov, S.J. Mondo, A. Salamov, I.V. Grigoriev, M.A. O'Malley.

A genomic catalog of stress response genes in anaerobic fungi for applications in bioproduction

Frontiers in Fungal Biology

Link


62.

K.D. Nguyen, M. Vigers, E. Sefah, S. Seppälä, J. Hoover, N.S. Schonenbach, B. Mertz, M.A. O'Malley, S. Han.

Homo-oligomerization of the human adenosine A2A receptor is driven by the intrinsically disordered C-terminus

Biophysical Journal

Link


61.

I.A. Podolsky, S. Seppälä, H. Xu, Y.S. Jin, M.A. O'Malley.

A SWEET surprise: anaerobic fungal sugar transporters and chimeras enhance sugar uptake in yeast

Metabolic Engineering

Link


60.

P.A. Leggieri, Y. Liu, M. Hayes, B. Connors, S. Seppälä, M.A. O'Malley, O.S. Venturelli. 

Integrating systems and synthetic biology to understand and engineer microbiomes

Annual Review of Biomedical Engineering

Link


59.

S.P. Lillington, W. Chrisler, C.H. Haitjema, S.P. Gilmore, C.R. Smallwood, V. Shutthanandan, J.E. Evans, M.A. O'Malley.

Cellulosome localization patterns vary across life stages of anaerobic fungi

MBio

Link


58.

S. Roux, B.G. Paul, S.C. Bagby, S. Nayfach, M.A. Allen, G. Attwood, R. Cavicchioli, L Chistoserdova, R.J. Gruninger, S.J. Hallam, M.E. Hernandez, M. Hess, W. Liu, T.A. McAllister, M.A. O'Malley, X. Peng, V.I. Rich, S.R. Saleska, E.A. Eloe-Fadrosh.

Ecology and molecular targets of hypermutation in the global microbiome

Nature Communications

Link


57.

C.L. Swift, K.B. Louie, B.P. Bowen, H.M. Olson, S.O. Purvine, A. Salamov, S.J. Mondo, K.V. Solomon, A.T. Wright, T.R. Northen, I.G. Grigoriev, N.P. Keller, M.A. O'Malley

Anaerobic gut fungi are an untapped reservoir of natural products

Proceedings of the National Academy of Sciences

Link


56.

L.M.G. Saye, T.A. Navaratna, J.P.J. Chong, M.A. O’Malley, M.K. Theodorou, M. Reilly. 

The anaerobic fungi: challenges and opportunities for industrial lignocellulosic biofuel production

Microorganisms

Link


55.

S.E. Wilken, J.M. Monk, P.A. Leggieri, C.E. Lawson, T.S. Lankiewicz, S. Seppälä, C.G. Daum, J. Jenkins, A.M. Lipzen, S.J. Mondo, K.W. Barry, I.V. Grigoriev, J.K. Henske, M.K. Theodorou, B.O. Palsson, L.R. Petzoid, M.A. O'Malley.

Experimentally validated reconstruction and analysis of a genome-scale metabolic model of an anaerobic Neocallimastigomycota fungus

mSystems

Link


54.

X. Peng, S.E. Wilken, T.S. Lankiewicz, S.P. Gilmore, J.L. Brown, J.K. Henske, C.L. Swift, A. Salamov, K. Barry, I.V. Grigoriev, M.K. Theodorou, D.L. Valentine, M.A. O'Malley.

Genomic and functional analyses of fungal and bacterial consortia that enable lignocellulose breakdown in goat gut microbiomes

Nature Microbiology (Cover Article)

Link


2020

53.

S. Nayfach, S. Roux, R. Seshadri, D. Udwary, N. Varghese, F. Schulz, D. Wu, D. Paez-Espino, I. Chen, M. Huntemann, K. Palaniappan, J. Ladau, S. Mukherjee, T.B.K. Reddy, T. Nielsen, E. Kirton, J.P. Faria, J.N. Edirisinghe, C.S. Henry, S.P Jungbluth, D. Chivian, P. Dehal, E.M. Wood-Charlson, A.P. Arkin, IMG/M Data Consortium (including M.A. O'Malley), E.A. Eloe-Fadrosh.

A genomic catalog of Earth’s microbiomes

Nature Biotechnology

Link


52.

V. Dollhofer, D. Young, S. Seppälä, C. Hooker, N. Youssef, M. Nagler, M. Reilly, Y. Li, K. Fliegerova, Y. Cheng, G.W. Griffith, M. Elshahed, K.V. Solomon, M.A. O'Malley, M.K. Theodorou.

The biotechnological potential of anaerobic gut fungi

Genetics and Biotechnology

Link


51.

J.I. Yoo, S. Seppälä, M.A. OʼMalley.

Engineered fluoride sensitivity enables biocontainment and selection of genetically modified yeasts

Nature Communications

Link


50.

C. Wangsanuwat, K. Heom, E. Liu, M.A. O’Malley.

Efficient and cost-effective bacterial mRNA sequencing from low input samples through ribosomal RNA depletion

BMC Genomics

Link


49.

L.H. Hagen, C.G. Brooke, C.A. Shaw, A.D. Norbeck, H. Piao, M.Ø. Arntzen, H.M. Olson, A. Copeland, N. Isern, A. Shukla, S. Roux, V. Lombard, B. Henrissat, M.A. O'Malley, I.V. Grigoriev, S.G. Tringe, R.I. Mackie, L. Pasa-Tolic, P.B. Pope, M. Hess.

Proteome specialization of anaerobic fungi during ruminal degradation of recalcitrant plant fiber

The ISME Journal

Link


48.

T.A. Rush, V. Puech-Pagès, A. Bascaules, P. Jargeat, F. Maillet, A. Haouy, A.Q. Maes, C.C. Carriel, D. Khokhani, M. Keller-Pearson, J. Tannous, K.R. Cope, K. Garcia, J. Maeda, C. Johnson, B. Kleven, Q.J. Choudhury, J. Labbe, C. Swift, M.A. O'Malley, J.W. Bok, S. Cottaz, S. Fort, V. Poinsot, J. Ane.

Lipo-chitooligosaccharides as regulatory signals of fungal growth and development

Nature Communications

Link


47.

S.E. Wilken, P.A. Leggieri, C. Kerdman‐Andrade, M. Reilly, M.K. Theodorou, M.A. O'Malley.

An Arduino-based automatic pressure evaluation system to quantify growth of non‐model anaerobes in culture

AIChE Journal

Link


46.

S. Seppälä, T.S. Lankiewicz, M. Saxena, J.K. Henske, A.A. Salamov, I.V. Grigoriev, M.A. O'Malley

Genomic and proteomic biases inform metabolic engineering strategies for anaerobic fungi

Metabolic Engineering Communications

Link


45.

S.P. Lillington, P.A. Leggieri, K.A. Heom, M.A. O’Malley.

Nature’s recyclers: anaerobic microbial communities drive crude biomass deconstruction

Current Opinion in Biotechnology

Link


44.

S.P. Gilmore, S.P. Lillington, C.H. Haitjema, R. de Groot, M.A. O'Malley.

Designing chimeric enzymes inspired by fungal cellulosomes

Synthetic and Systems Biotechnology

Link


43.

J.I. Yoo, P.S. Daugherty, M.A. O’Malley.

Bridging non-overlapping reads illuminates high-order epistasis between distal protein sites in a GPCR

Nature Communications

Link


2019

42.

S. Seppälä, J.I. Yoo, D. Yur, M.A. O'Malley.

Heterologous transporters from anaerobic fungi bolster fluoride tolerance in Saccharomyces cerevisiae

Metabolic Engineering Communications

Link


41.

C.L. Swift, J.L. Brown, S. Seppälä, M.A. O’Malley.

Co-cultivation of the anaerobic fungus Anaeromyces robustus with Methanobacterium bryantii enhances transcription of carbohydrate active enzymes

Journal of Industrial Microbiology and Biotechnology

Link


40.

C.E. Lawson, W.R. Harcombe, R. Hatzenpichler, S.R. Lindemann, F.E. Löffler, M.A. O'Malley, H.G. Martin, B.F. Pfleger, L. Raskin, O.S. Venturelli, D.G. Weissbrodt, D.R. Noguera, K.D. McMahon.

Common principles and best practices for engineering microbiomes

Nature Reviews Microbiology

Link


39.

S.P. Gilmore, T.S. Lankiewicz, S.E. Wilken, J.L. Brown, J.A. Sexton, J.K. Henske, M.K. Theodorou, D.L. Valentine, M.A. O'Malley

Top-down enrichment guides in formation of synthetic microbial consortia for biomass degradation

ACS Synthetic Biology

Link


38.

I.A. Podolsky, S. Seppälä, T.S. Lankiewicz, J.L. Brown, C.L. Swift, M.A. O'Malley.

Harnessing nature's anaerobes for biotechnology and bioprocessing

Annual Review of Chemical and Biomolecular Engineering

Link


37.

C.L. Swift, I.A. Podolsky, T.S. Lankiewicz, S. Seppälä, M.A. O'Malley.

Linking ‘omics’ to function unlocks the biotech potential of non-model fungi

Current Opinion in Systems Biology

Link


2018

36.

K.V. Solomon, J.K. Henske, S.P. Gilmore, A. Lipzen, I.V. Grigoriev, D. Thompson, M.A. O'Malley.

Catabolic repression in early-diverging anaerobic fungi is partially mediated by natural antisense transcripts

Fungal Genetics and Biology

Link


35.

J.K. Henske, S.P. Gilmore, C.H. Haitjema, K.V. Solomon, M.A. O'Malley.

Biomass‐degrading enzymes are catabolite repressed in anaerobic gut fungi

AIChE Journal

Link


34.

X. Peng, C.L. Swift, M.K. Theodorou, M.A. O’Malley.

Methods for genomic characterization & maintenance of anaerobic fungi

Methods in Molecular Biology: Fungal Genomics, Springer Protocols Series

Link


33.

J.I. Yoo, M.A. O’Malley.

Tuning vector stability and integration frequency elevates functional GPCR production and homogeneity in Saccharomyces cerevisiae

ACS Synthetic Biology

Link


32.

K.V. Solomon, C.H. Haitjema, J.K. Henske, S.P. Gilmore, D. Borges-Rivera, A. Lipzen, H.M. Brewer, S.O. Purvine, A.T. Wright, M.K. Theodorou, I.V. Grigoriev, A. Regev, D.A. Thompson, M.A. O'Malley

Early-branching gut fungi possess a large, comprehensive array of biomass-degrading enzymes

Science

Link


31.

J.K. Henske, S.D. Springer, M.A. O'Malley, A. Butler.

Substrate-based differential expression analysis reveals control of biomass degrading enzymes in Pycnoporus cinnabarinus

Biochemical Engineering Journal

Link


30.

S.E. Wilken, M. Saxena, L.R. Petzold, M.A. O’Malley.

In silico identification of microbial partners to form consortia with anaerobic fungi

Processes

Link


2017

29.

J.K. Henske, S.P. Gilmore, D. Knop, F.J. Cunningham, J.A. Sexton, C.R. Smallwood, V. Shutthanandan, J.E. Evans, M.K. Theodorou, M.A. O'Malley

Transcriptomic characterization of Caecomyces churrovis: a novel, non-rhizoid forming lignocellulolytic anaerobic fungus

Biotechnology for Biofuels

Link


28.

J.K. Henske, S.E. Wilken, K.V. Solomon, C.R. Smallwood, V. Shutthanandan, J.E. Evans, M.K. Theodorou, M.A. O'Malley.

Metabolic characterization of anaerobic fungi provides a path forward for bioprocessing of crude lignocellulose

Biotechnology and Bioengineering

Link


27.

S. Seppälä, D. Knop, K.V. Solomon, M.A. O’Malley.

The importance of sourcing enzymes from non-conventional fungi for metabolic engineering and biomass breakdown

Metabolic Engineering

Link


26.

J.E. Edwards, R.J. Forster, T.M. Callaghan, V. Dollhofer, S.S. Dagar, Y. Cheng, J. Change, S. Kittelmann, K. Fliegerova, A.K. Puniya, J.K. Henske, S.P. Gilmore, M.A. O'Malley, G.W. Griffith, H. Smidt.

PCR and omics-based techniques to study the diversity, ecology, and biology of anaerobic fungi: insights, challenges, and opportunities

Frontiers in Microbiology

Link


25.

S.P. Gilmore, J.K. Henske, J.A. Sexton, K.V. Solomon, S. Seppälä, J.I. Yoo, L.M. Huyett, A. Pressman, J.Z. Cogan, V. Kivenson, X. Peng, Y. Tan, D.L. Valentine, M.A. O'Malley

Genomic analysis of methanogenic archaea reveals a shift towards energy conservation

BMC Genomics

Link


24.

C.H. Haitjema, S.P. Gilmore, J.K. Henske, K.V. Solomon, R. De Groot, A. Kuo, S.J. Mondo, A.A. Salamov, K. LaButti, Z. Zhao, J. Chiniquy, K. Barry, H.M. Brewer, S.O. Purvine, A.T. Wright, M. Hainaut, B. Boxma, T. van Alen, J.H.P. Hackstein, B. Henrissat, S.E. Baker, I.V. Grigoriev, M.A. O'Malley

A parts list for fungal cellulosomes revealed by comparative genomics

Nature Microbiology

Link


23.

S.J. Mondo, R.O. Dannebaum, R.C. Kuo, K.B. Louie, A.J. Bewick, K. LaButti, S. Haridas, A. Kuo, A. Salamov, S.R. Ahrendt, R. Lau, B.P. Bowen, A. Lipzen, W. Sullivan, B.B. Andreopoulos, A. Clum, E. Lindquist, C. Daum, T.R. Northen, G. Kunde-Ramamoorthy, R.J. Schmitz, A. Gryganskyi, D. Culley, J. Magnuson, T.Y. James, M.A. O'Malley, J.E. Stajich, J.W. Spatafora, A. Visel,  I.V. Grigoriev

Widespread adenine N6-methylation of active genes in fungi

Nature Genetics

Link


22.

J. Niu, D.J. Lunn, A. Pusuluri, J.I. Yoo, M.A. O'Malley, S. Mitragotri, H.T. Soh, C.J. Hawker.

Engineering live cell surfaces with functional polymers via cytocompatible controlled radical polymerization

Nature Chemistry

Link


2016

21.

S. Seppälä, K.V. Solomon, S.P. Gilmore, J.K. Henske, M.A. O'Malley.

Mapping the membrane proteome of anaerobic gut fungi identifies a wealth of carbohydrate binding proteins and transporters

Microbial Cell Factories

Link


20.

X.Peng, S.P. Gilmore, M.A. O’Malley.

Microbial communities for bioprocessing: lessons learned from nature

Current Opinion in Chemical Engineering

Link


19.

N.S. Sconenbach, M.D. Rieth, S. Han, M.A. O’Malley.

Adenosine A2a receptors form distinct oligomers in protein detergent complexes

FEBS Letters

Link


18.

J.L. Guerrero, P.S. Daugherty, M.A. O'Malley.

Emerging technologies for protease engineering: New tools to clear out disease

Biotechnology and Bioengineering

Link


17.

K. V. Solomon, J. K. Henske, C. H. Haitjema, S. P. Gilmore, M. K. Theodorou, M.A. O’Malley.

Fungal diversity notes 253-366: taxonomic and phylogenetic contributions to fungal taxa

Fungal Diversity

Link


16.

K.V. Solomon, J.K. Henske, M.K. Theodorou, M.A. O'Malley.

Robust and effective methodologies for cryopreservation and DNA extraction from anaerobic gut fungi

Anaerobe

Link


15.

K.V. Solomon, E. Ovadia, F. Yu, W. Mizunashi, M.A. O'Malley.

Mitochondrial targeting increases specific activity of a heterologous valine assimilation pathway in Saccharomyces cerevisiae

Metabolic Engineering Communications

Link


14.

J.L. Guerrero, M.A. O'Malley, P.S. Daugherty.

Intracellular FRET-based screen for redesigning the specificity of secreted proteases

ACS Chemical Biology

Link


2015

13.

S.P. Gilmore, J.K. Henske, M.A. O'Malley.

Driving biomass breakdown through engineered cellulosomes

Bioengineered

Link


2014

12.

M.A. O'Malley, N. Schonenbach, S. Hussain.

Structure and function of G protein-coupled receptor oligomers: implications for drug

WIRES Nanomedicine

Link


11.

K.V. Solomon, C.H. Haitjema, D.A. Thompson, M.A. O'Malley.

Extracting data from the muck: deriving biological insight from complex microbial communities and non-model organisms with next generation sequencing

Current Opinion in Biotechnology

Link


10.

C.H. Haitjema, K.V. Solomon, J.K. Henske, M.K. Theodorou, M.A. O'Malley.

Anaerobic gut fungi: advances in isolation, culture, and cellulolytic enzyme discovery for biofuel production

Biotechnology and Bioengineering

Link


2011

9.

M.A. O'Malley, M.K. Theodorou, C.A. Kaiser.

Evaluating expression and catalytic activity of anaerobic fungal fibrolytic enzymes native to Piromyces sp. E2 in Saccharomyces cerevisiae

Environmental Progress & Sustainable Energy

Link


8.

M.A. O'Malley.

Neuromethods, Vol. 60: Methods for the Discovery and Characterization of G Protein‐Coupled Receptors

ChemBioChem

Link


7.

M.A. O'Malley, M.E. Helgeson, N.J. Wagner, A.S. Robinson.

Toward rational design of protein detergent complexes: determinants of mixed micelles that are critical for the in vitro stabilization of a G-protein coupled receptor

Biophysical Journal

Link


6.

M.A. O'Malley, M.E. Helgeson, N.J. Wagner, A.S. Robinson.

The morphology and composition of cholesterol-rich micellar nanostructures determine transmembrane protein (GPCR) activity

Biophysical Journal

Link


2010

5.

M.A. O'Malley, A.N. Naranjo, T. Lazarova, A.S. Robinson.

Analysis of Adenosine A2a Receptor Stability: Effects of Ligands and Disulfide Bonds

Biochemistry

Link


2009

4.

M.A. O'Malley, J.D. Mancini, C.L. Young, E.C. McCusker, D. Raden, A.S. Robinson.

Progress toward heterologous expression of active G‐protein‐coupled receptors in Saccharomyces cerevisiae: Linking cellular stress response with translocation

Protein Science

Link


2008

3.

E.C. McCusker, S.E. Bane, M.A. O'Malley, A.S. Robinson.

Heterologous GPCR expression: a bottleneck to obtaining crystal structures

Biotechnology Progress

Link


2.

A. Wedekind, M.A. O'Malley, R.T. Niebauer, A.S. Robinson.

Optimization of the Human Adenosine A2a Receptor Yields in Saccharomyces cerevisiae

Biotechnology Progress

Link


2007

1.

M.A. O'Malley, T. Lazarova, Z.T. Britton, A.S. Robinson.

High-level expression in Saccharomyces cerevisiae enables isolation and spectroscopic characterization of functional human adenosine A2a receptor

Journal of Structural Biology

Link


Patents

  1. M.A. O'Malley, I.A. Podolsky, S. Seppala.
    US Patent 12,098,171: Hybrid sugar transporters with altered sugar transport activity and uses thereof.
  2. M.A. O'Malley, K. Solomon, C. Haitjema.
    US Patent 12,037,371: Proteins from anaerobic fungi and uses thereof.
  3. M.A. O'Malley, K. Solomon, C. Haitjema.
    US Patent 11,021,524: Proteins from anaerobic fungi and uses thereof.
  4. MA. O'Malley, K. Solomon, C. Haitjema.
    US Patent 10,717,768: Proteins from anaerobic fungi and uses thereof.
  5. M.A. O'Malley, K. Solomon, W. Mizunashi, F. Yu.M
    US Patent 10,676,766: Biological production of methyl methacrylate.